Index

A

activity_graph() (cana.boolean_network.BooleanNetwork method) AND() (in module cana.datasets.bools) approx_dynamic_impact() (cana.boolean_network.BooleanNetwork method) attractor() (cana.boolean_network.BooleanNetwork method)

attractor_driver_nodes() (cana.boolean_network.BooleanNetwork method) attractors() (cana.boolean_network.BooleanNetwork method) (in module cana.bns) average_trajectory_length() (cana.boolean_network.BooleanNetwork method)

B

basin_entropy() (cana.boolean_network.BooleanNetwork method) bias() (cana.boolean_node.BooleanNode method) BooleanNetwork (class in cana.boolean_network)

BooleanNode (class in cana.boolean_node) BREAST_CANCER() (in module cana.datasets.bio) BUDDING_YEAST() (in module cana.datasets.bio)

C

c_sensitivity() (cana.boolean_node.BooleanNode method) cana.bns module cana.boolean_network module cana.boolean_node module cana.canalization.boolean_canalization module cana.control.fvs module cana.control.mds module cana.control.sc module cana.datasets.bio module

cana.datasets.bools module cana.datasets.motifs module cana.random_boolean_network module cana.utils module canalizing_map() (cana.boolean_node.BooleanNode method) computes_pi_coverage() (in module cana.canalization.boolean_canalization) computes_ts_coverage() (in module cana.canalization.boolean_canalization) conditional_effective_graph() (cana.boolean_network.BooleanNetwork method) constant_step() (cana.boolean_node.BooleanNode method) CONTRADICTION() (in module cana.datasets.bools) controlled_attractor_graph() (cana.boolean_network.BooleanNetwork method) controlled_state_transition_graph() (cana.boolean_network.BooleanNetwork method) COPYx1() (in module cana.datasets.bools)

D

derrida_coefficient() (cana.boolean_network.BooleanNetwork method) derrida_curve() (cana.boolean_network.BooleanNetwork method) dist_from_attractor() (cana.boolean_network.BooleanNetwork method)

DROSOPHILA() (in module cana.datasets.bio) dynamic_step() (cana.boolean_node.BooleanNode method) dynamics_canalization_map() (cana.boolean_network.BooleanNetwork method)

E

edge_effectiveness() (cana.boolean_node.BooleanNode method) edge_redundancy() (cana.boolean_node.BooleanNode method) edge_symmetry() (cana.boolean_node.BooleanNode method) effective_connectivity() (cana.boolean_node.BooleanNode method)

effective_graph() (cana.boolean_network.BooleanNetwork method) effective_indegrees() (cana.boolean_network.BooleanNetwork method) effective_outdegrees() (cana.boolean_network.BooleanNetwork method) entropy() (in module cana.utils) er_boolean_network() (in module cana.random_boolean_network)

F

feedback_vertex_set_driver_nodes() (cana.boolean_network.BooleanNetwork method) find_implicants_qmOLD() (in module cana.canalization.boolean_canalization) find_two_symbols_v2() (in module cana.canalization.boolean_canalization) flip_binstate_bit_set() (in module cana.utils) flip_bitset_in_strstates() (in module cana.utils) fraction_pinned_attractors() (cana.boolean_network.BooleanNetwork method) fraction_pinned_configurations() (cana.boolean_network.BooleanNetwork method)

from_dict() (cana.boolean_network.BooleanNetwork class method) from_file() (cana.boolean_network.BooleanNetwork class method) from_output_list() (cana.boolean_node.BooleanNode class method) from_string_boolean() (cana.boolean_network.BooleanNetwork class method) (in module cana.random_boolean_network) from_string_cnet() (cana.boolean_network.BooleanNetwork class method) fvs_bruteforce() (in module cana.control.fvs) fvs_grasp() (in module cana.control.fvs)

G

get_node_name() (cana.boolean_network.BooleanNetwork method)

I

input_mask() (cana.boolean_node.BooleanNode method) input_redundancy() (cana.boolean_node.BooleanNode method)

input_symmetry() (cana.boolean_node.BooleanNode method) isclose() (in module cana.utils)

L

LEUKEMIA() (in module cana.datasets.bio) load_all_cell_collective_models() (in module cana.datasets.bio)

load_cell_collective_model() (in module cana.datasets.bio) look_up_table() (cana.boolean_node.BooleanNode method)

M

make_transition_density_tables() (in module cana.canalization.boolean_canalization) MARQUESPITA() (in module cana.datasets.bio) mds() (in module cana.control.mds) mean_controlable_configurations() (cana.boolean_network.BooleanNetwork method) mean_fraction_pinned_configurations() (cana.boolean_network.BooleanNetwork method) mean_reachable_attractors() (cana.boolean_network.BooleanNetwork method) mean_reachable_configurations() (cana.boolean_network.BooleanNetwork method) mindist_from_source() (in module cana.utils) minimum_dominating_set_driver_nodes() (cana.boolean_network.BooleanNetwork method) module cana.bns cana.boolean_network cana.boolean_node cana.canalization.boolean_canalization cana.control.fvs cana.control.mds cana.control.sc cana.datasets.bio cana.datasets.bools cana.datasets.motifs cana.random_boolean_network cana.utils

N

ncr() (in module cana.utils) network_bias() (cana.boolean_network.BooleanNetwork method)

network_motif() (in module cana.datasets.motifs) number_interactions() (cana.boolean_network.BooleanNetwork method)

O

OR() (in module cana.datasets.bools)

output_transitions() (in module cana.utils)

P

partial_derative_node() (cana.boolean_network.BooleanNetwork method) pathlength() (in module cana.utils) pi_coverage() (cana.boolean_node.BooleanNode method)

pinned_step() (cana.boolean_network.BooleanNetwork method) pinning_controlled_state_transition_graph() (cana.boolean_network.BooleanNetwork method) print_logic_table() (in module cana.utils)

R

random_automata_table() (in module cana.random_boolean_network) regular_boolean_network() (in module cana.random_boolean_network)

RULE110() (in module cana.datasets.bools) RULE90() (in module cana.datasets.bools)

S

sc() (in module cana.control.sc) sc_min_size() (in module cana.control.sc) schemata_look_up_table() (cana.boolean_node.BooleanNode method) seq_upto() (in module cana.utils) set_constant() (cana.boolean_network.BooleanNetwork method) state_transition_graph() (cana.boolean_network.BooleanNetwork method)

state_transition_graph_reachability() (cana.boolean_network.BooleanNetwork method) step() (cana.boolean_network.BooleanNetwork method) stg_indegree() (cana.boolean_network.BooleanNetwork method) structural_controllability_driver_nodes() (cana.boolean_network.BooleanNetwork method) structural_graph() (cana.boolean_network.BooleanNetwork method) structural_indegrees() (cana.boolean_network.BooleanNetwork method) structural_outdegrees() (cana.boolean_network.BooleanNetwork method)

T

THALIANA() (in module cana.datasets.bio) to_cnet() (cana.boolean_network.BooleanNetwork method)

trajectory() (cana.boolean_network.BooleanNetwork method) trajectory_to_attractor() (cana.boolean_network.BooleanNetwork method) ts_coverage() (cana.boolean_node.BooleanNode method)

X

XOR() (in module cana.datasets.bools)